Zeiss (LSM) file format support
Kitware Inc.
| Please use this identifier to cite or link to this publication: http://hdl.handle.net/1926/139 |
Published in The Insight Journal - 2005 August - December.
Submitted by Mathieu Malaterre on 11-14-2006.
This filter will allow support for file reading and writting in ITK for the Zeiss (LSM) file format.
Data
1 File (61Kb)
lsm.tgz (61Kb)
Code
Automatic Testing Results
by Insight-Journal Dashboard
on Thu Nov 10 11:22:11 2005 for revision #1 
expertise: 5 sensitivity: 3.3 
This project had trouble building: 50 errors, 0 warningsClick here for more details.
Go here to access the main testing dashboard.
Reviews
several chanels are not supported
by Gaetan Lehmann on 11-14-2005 for revision #1 expertise: 3 sensitivity: 4.7
I successfully run it on my host. I\'m able to read lsm files in 3D with the good spacing which is very nice
However,
It really nice to have a LSM reader for ITK.
Thanks for that work !
However,
- I have to replace
#include \"tiffio/tiffio.h\"
by#include \"tiffio.h\"
in itkLSMImageIO.cxx to build the test.
- the reader works only if there is only one chanel, and return a quite strange \"Cannot open the file!\" if the lsm contains 2 chanels. You can get a (big) lsm file with 2 chanels at http://voxel.jouy.inra.fr/blastocyste.lsm if needed.
It really nice to have a LSM reader for ITK.
Thanks for that work !
Comment by Mathieu Malaterre: Add this as a bug report
Sorry I did not check reviews in a long time. Next time, please add this as a bug report, I tend to read it more easily...
http://vtk.org/Bug/bug.php?op=show&bugid=2831&pos=
Thanks for report !
Mathieu
Explaination on dashboard issues: need ITK CVS
by Mathieu Malaterre on 11-14-2005 for revision #1 expertise: 5 sensitivity: 3.7
Build errors:
There are build errors on the Insight Journal, because the version used is ITK 2.2.1 whereas the code needs ITK CVS, due to some very recent change in ITK CVS, in particular TIFFImageIO and the tiff library.
There are build errors on the Insight Journal, because the version used is ITK 2.2.1 whereas the code needs ITK CVS, due to some very recent change in ITK CVS, in particular TIFFImageIO and the tiff library.
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| Categories: | CMake, Images, IO, Programming |
| Keywords: | Zeiss, LSM, Confocal Microscopy, |
| Toolkit: | ITK (moved into the toolkit) |
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