Read and Write Support for MevisLab Dicom/Tiff Format
Radboud University Nijmegen Medical Centre
| Please use this identifier to cite or link to this publication: http://hdl.handle.net/1926/1514 |
Published in The Insight Journal - 2009 January - June.
Submitted by Rashindra Manniesing on 01-18-2009.
MevisLab [2] is a development environment for medical image processing and visualization, which supports the reading and writing of combined dicom/tiff images. In this document we provide the source code (ImageIO factory) for the Insight Toolkit (ITK) framework [4]. This image IO plugin supports 2D, 3D and 4D scalar images.
Note: this class depends on version GDCM 2.0 and above.
Note: this class depends on version GDCM 2.0 and above.
Code
Automatic Testing Results
by Insight-Journal Dashboard
on Mon Nov 2 03:11:33 2009 for revision #9 
expertise: 5 sensitivity: 5
Automatic Testing Results
by Insight-Journal Dashboard
on Fri Feb 20 07:03:46 2009 for revision #3 expertise: 5 sensitivity: 5 Reviews
These Reader Writer of mevis data are a great help
by Delphine Ribes on 2011-06-24 08:34:51 for revision #12 expertise: 3 sensitivity: 5 
Summary:
The authors provide additionnal ITK classes for reading/writing Dcm/Tiff from MEVIS
Hypothesis:The authors provide additionnal ITK classes for reading/writing Dcm/Tiff from MEVIS
Evidence:The authors provides a test file wich I've direclty used with some MEVIS data I had.
Open Science:The authors provide the source code + a test file.
The authors did not provide dataset to test the code
Reproducibility:The authors nicely describe how to use its code. However, It took me some time before being able to compile the code.
I am under Windows7 64bit, VS 2008
I've used:
gdcm 2.0.10 (static)
ITK 3.20 (shared)
tiff-3.8.2-1
WARNING some version of gdcm does not compile or does not compile together with ITK.
gdcm in shared library did not compile
1. To compile ITK, I had to manually edit the properties of the ITK project : itkTestDriver
add:
a. Additionnal Depedencies:
gdcmCommon.lib
gdcmDICT.lib
gdcmDSED.lib
gdcmexpat.lib
gdcmgetopt.lib
gdcmIOD.lib
gdcmjpeg12.lib
gdcmjpeg16.lib
gdcmjpeg8.lib
gdcmMSFF.lib
gdcmopenjpeg.lib
gdcmzlib.lib
libtiff.lib
b. Additionnal Library Directories:
add library directory of TIFF library
c. Add an include file into MevisDicomTiffImageIO.h:
#include "gdcmByteSwapFilter.h"
Maybe not the perfect one but I took one where gdcm::DataSet was used if you do not include it leads to the following error:
itkMevisDicomTiffImageIO.h(152) : error C2039: 'DataSet' : is not a member of 'gdcm'
2. To compile the itkMevisTest.cxx file:
I had again to manually edit the VS project the same way as presented above.
Open source Contributions:As I've had issues with gdcm library, it tooks me two days to make it compile
Code Quality :I did not extensively review the code, but it seems to be clean C++ of high quality.
Free comment :This tool is usefull when you are dealing with MEVIS data and should be incorporated into ITK library if possible (issue with gdcm compilation).
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| Categories: | Data Representation, DICOM, Image, Images, IO |
| Keywords: | imageIO, MevisLab, |
| Toolkit: | CMake, ITK |
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