The Insight Journal is an Open Access on-line publication covering the domain of medical image processing and visualization.
The unique characteristics of the Insight Journal include:
- Open-access to articles, data, code, and reviews
- Open peer-review that invites discussion between reviewers and authors
- Emphasis on reproducible science via automated code compilation and testing
- Support for continuous revision of articles, code, and reviews
The MICCAI'08 workshops have been moved to the Midas Journal.
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The unique characteristics of the Insight Journal include:
- Open-access to articles, data, code, and reviews
- Open peer-review that invites discussion between reviewers and authors
- Emphasis on reproducible science via automated code compilation and testing
- Support for continuous revision of articles, code, and reviews
The MICCAI'08 workshops have been moved to the Midas Journal. Subscribe to the Kitware's newsletter
to receive news about open-source on your desk, it's free!
By default ITK images use a contiguous memory model. This means pixel elements are stored in a single 1-D array, where each element is adjacent in memory to the previous element. However in some situations it is not desirable to use this memory model. This [...]
Rotational Registration of Spherical Surfaces Represented as QuadEdge Meshes
Published in The Insight Journal
Published in The Insight Journal
This document describes a contribution to the Insight Toolkit intended to support the process of registering two Meshes. The methods included here are restricted to Meshes with a Spherical geometry and topology, and with scalar values associated to their [...]
An ITK Implementation of the Symmetric Log-Domain Diffeomorphic Demons Algorithm
Published in The Insight Journal
Published in The Insight Journal
This article provides an implementation of the symmetric log-domain diffeomorphic image registration algorithm, or symmetric demons algorithm for short. It generalizes Thirion's demons and the diffeomorphic demons algorithm. The main practical advantages of [...]
This document describes an implementation of David S. Tuch's numerical Q-Ball reconstruction algorithm implemented using the Insight Toolkit ITK (www.itk.org). The document is accompanied with the source code, input data, parameters and output data that were [...]
Cell Tracking using Coupled Active Surfaces for Nuclei and Membranes
Published in The Insight Journal
Published in The Insight Journal
An Insight Toolkit (ITK) processing framework for segmenting and tracking nuclei in time-lapse microscopy images using coupled active contours is presented in this paper. We implement the method of Dufour et al.[2] to segment and track cells in fluorescence [...]
Branches of tubular structures (vasculature, trachea, neuron, etc.) in medical images are critical for the topology of these structures. In many applications, It is very helpful to be able to decompose tubular structures and identify every individual [...]
Several algorithms exist for correcting the nonuniform intensity in magnetic resonance images caused by field
inhomogeneities. These algorithms constitute important preprocessing steps for subsequent image analysis tasks. One such algorithm, known as [...]
Junctions of tubular structures (vasculature, trachea, neuron, etc) in medical images are critical for the topology of these structures. Identification of them is helpful in many applications. For example, quantification of geometric vascular features, [...]
An Insight Toolkit (ITK) processing framework for segmentation using active contours without edges
is presented in this paper. Our algorithm is based on the work of Chan and Vese [1] that uses level-
sets to accomplish region segmentation in images with [...]
An Insight Toolkit (ITK) processing framework for simultaneous segmentation of multiple objects using
active contours without edges is presented in this paper. These techniques are also popularly referred to
as multiphase methods. Earlier, we had an [...]
Microscopy Image Analysis: Blob Segmentation using Geodesic Active Contours
Published in The Insight Journal
Published in The Insight Journal
An Insight Toolkit (ITK) processing framework for blob segmentation with applications to microscopy
images is presented in this paper. Our algorithm is a reļ¬nement of the work of Mosaliganti et al. [3] for
splitting cell clusters. The basic idea is to [...]
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Journals
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Publication of the Month
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| Level Set Segmentation: Active Contours without edge
by Mosaliganti K., Smith B., Gelas A., Gouaillard A., Megason S.
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Issues Accepting Submissions
Most Recent Reviews
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| Slow on 3D data, but effective N4ITK: Nick's N3 ITK Implementation... by Andriy Fedorov on 2009-06-17 16:05:40
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| Valuable contribution to diffeomorphic... An ITK Implementation of the Symmetric... by Yongqiang Zhao on 2009-05-27 12:50:31
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| Cannot Compile the program N4ITK: Nick's N3 ITK Implementation... by Sylvain Bouix on 2009-05-21 15:29:36
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| Much needed class for making BSplines... Helper class for initializing the grid... by Hans Johnson on 2009-05-14 14:02:20
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| Review of Level Set Segmentation:... Level Set Segmentation: Active Contours... by Navneeth Subramanian on 2009-05-11 04:47:20
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| Graphic Graticules are Grrreat Gridding Graphic Graticules by Wesley Turner on 2009-04-27 13:23:59
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